Matlab Code and data for Hill et al. “Bayesian Inference of Signaling Network Topology in a Cancer Cell Line”, Bioinformatics, 2012.

 
 

Code

Data (CSV format)


The MATLAB MAT file here contains the breast cancer data analysed in the paper (also available in CSV format above), inputs necessary to run inference, and the outputs you should obtain upon running the following at the MATLAB command line:

 

[edge_prob_matrix interaction_sign_matrix chosen_lambda] = dynamic_network_inference(log(MDAMB468_data),4,prior_graph,0:0.5:10,'full',1,0);